字段按可用性分组。reserved 字段属于为数据库可持续发展而设计的语义 schema,本版没有数据,但保留其定义以支持后续扩展;默认隐藏。

化合物字段

字段类型Non-null说明
molecule_uidVARCHAR1,391,199
化合物主键:完整 InChIKey、脂类简写、名称键或登记号
Canonical compound key: full InChIKey, lipid shorthand, name key, or registry id
uuid_typeVARCHAR1,391,199
molecule_uid 的类型:inchikey / lipidkey / namekey / registry
Type of molecule_uid: inchikey / lipidkey / namekey / registry
uid_sourceVARCHAR1,391,199
生成 molecule_uid 所用的原始字符串
Raw source string from which molecule_uid was derived
inchikeyVARCHAR1,067,791
完整 27 位 InChIKey(含立体化学)
Full 27-character InChIKey including stereochemistry
inchiVARCHAR767,675
InChI 字符串
InChI string
smilesVARCHAR[]1,334,186
SMILES 字符串(列表)
SMILES strings (list)
smiles_canonicalVARCHAR540,042
规范化 SMILES;结构无法解析时为 UNPARSABLE
Canonicalised SMILES; UNPARSABLE when structure could not be parsed
formulaVARCHAR1,075,625
分子式
Molecular formula
molecular_weightDOUBLE304,858
分子量(Da)
Molecular weight (Da)
exact_massDOUBLE747,076
单同位素中性质量(Da)
Monoisotopic neutral mass (Da)
chargeBIGINT24,884
净形式电荷
Net formal charge
nameVARCHAR[]1,391,138
化合物名称(列表)
Compound names (list)
iupac_nameVARCHAR[]301,462
IUPAC 名称(列表)
IUPAC names (list)
synonymsVARCHAR[]952,894
别名(列表)
Synonyms (list)
kingdomVARCHAR23,788
ClassyFire 界
ClassyFire kingdom
superclassVARCHAR33,629
ClassyFire 超类
ClassyFire superclass
classVARCHAR33,484
ClassyFire 类
ClassyFire class
subclassVARCHAR28,263
ClassyFire 亚类
ClassyFire subclass
direct_parentVARCHAR33,581
ClassyFire 直接母体
ClassyFire direct parent
molecular_frameworkVARCHAR29,994
ClassyFire 分子骨架
ClassyFire molecular framework
taxonomy_alternative_parentsVARCHAR[]14,479
ClassyFire 替代母体
ClassyFire alternative parents
taxonomy_substituentsVARCHAR[]14,537
ClassyFire 取代基
ClassyFire substituents
taxonomy_external_descriptorsVARCHAR[]6,146
ClassyFire 外部描述符
ClassyFire external descriptors
stateVARCHAR5,730
来源报告的物理状态
Physical state reported by source
logpDOUBLE55,877
预测 logP
Predicted logP
logsDOUBLE0
预测 logS
Predicted logS
pka_acidicDOUBLE0
预测酸性 pKa
Predicted acidic pKa
pka_basicDOUBLE0
预测碱性 pKa
Predicted basic pKa
hbaDOUBLE48,876
氢键受体数
Hydrogen-bond acceptors
hbdDOUBLE48,876
氢键供体数
Hydrogen-bond donors
tpsaDOUBLE48,876
拓扑极性表面积
Topological polar surface area
water_solubilityDOUBLE0
实验水溶性
Experimental water solubility
melting_pointDOUBLE0
熔点
Melting point
boiling_pointDOUBLE0
沸点
Boiling point
source_categoryVARCHAR[]29,192
该化合物涉及的宿主类群(plant / animal / fungi / bacterium / human / microbe)
Organism classes reported for this compound (plant / animal / fungi / bacterium / human / microbe)
molecule_typeVARCHAR30,807
实体类型:small_molecule / protein / biotech / oligonucleotide / oligosaccharide
Entity type: small_molecule / protein / biotech / oligonucleotide / oligosaccharide
originVARCHAR26
来源标注的内源/外源
Exogenous vs endogenous annotation from source
max_phaseVARCHAR6,183
最高临床阶段(药物来源)
Maximum clinical phase (drug sources)
source_organism_classVARCHAR[]639
宿主类群标签(预留)
Organism class labels (reserved)
occurrence_contextVARCHAR[]0
出现情境(预留,未填充)
Context of occurrence (reserved; not populated)
mixtureSTRUCT("system" VARCHAR, id VARCHAR, "label" VARCHAR, rank VARCHAR, "value" VARCHAR, evidence VARCHAR[])[]0
混合物成员记录(预留)
Mixture membership records (reserved)
casVARCHAR[]47,289
CAS 登记号(列表)
CAS registry numbers (list)
pubchem_cidVARCHAR[]301,674
PubChem CID(列表)
PubChem CIDs (list)
hmdb_idVARCHAR15,141
HMDB 编号
HMDB identifier
chemspider_idVARCHAR11,884
ChemSpider 编号
ChemSpider identifier
kegg_idVARCHAR5,390
KEGG 化合物编号
KEGG compound identifier
chebi_idVARCHAR9,234
ChEBI 编号
ChEBI identifier
drugbank_idVARCHAR3,813
DrugBank 编号
DrugBank identifier
foodb_idVARCHAR5,688
FooDB 编号
FooDB identifier
metlin_idVARCHAR1,289
METLIN 编号
METLIN identifier
pdb_idVARCHAR368
PDB 配体编号
PDB ligand identifier
biocyc_idVARCHAR1,793
BioCyc 编号
BioCyc identifier
bigg_idVARCHAR437
BiGG 编号
BiGG identifier
knapsack_idVARCHAR3,072
KNApSAcK 编号
KNApSAcK identifier
wikipedia_idVARCHAR5,311
维基百科页面标题
Wikipedia page title
phenolexplorer_idVARCHAR201
Phenol-Explorer 编号
Phenol-Explorer identifier
vmh_idVARCHAR865
VMH 编号
VMH identifier
registrySTRUCT("system" VARCHAR, id VARCHAR, "label" VARCHAR, rank VARCHAR, "value" VARCHAR, evidence VARCHAR[])[]926,080
带溯源证据的登记记录(结构体列表)
Registry records with provenance evidence (list of structs)
hmdb_diseasesVARCHAR[]0
HMDB 关联疾病(预留)
Diseases associated in HMDB (reserved)
hmdb_disease_omimVARCHAR[]0
HMDB 疾病的 OMIM 编号(预留)
OMIM ids for HMDB diseases (reserved)
diseaseSTRUCT("system" VARCHAR, id VARCHAR, "label" VARCHAR, rank VARCHAR, "value" VARCHAR, evidence VARCHAR[])[]0
疾病关联(预留)
Disease associations (reserved)
molecule_relationSTRUCT("system" VARCHAR, id VARCHAR, "label" VARCHAR, rank VARCHAR, "value" VARCHAR, evidence VARCHAR[])[]0
与其他分子的关系(预留)
Relations to other molecules (reserved)
hmdb_pathwaysVARCHAR[]0
HMDB 通路名称(预留)
HMDB pathway names (reserved)
pathwaySTRUCT("system" VARCHAR, id VARCHAR, "label" VARCHAR, rank VARCHAR, "value" VARCHAR, evidence VARCHAR[])[]29,105
NPClassifier 通路/类别注释
NPClassifier pathway / class annotation
hmdb_targetsVARCHAR[]0
HMDB 蛋白靶点(预留)
HMDB protein targets (reserved)
targetSTRUCT("system" VARCHAR, id VARCHAR, "label" VARCHAR, rank VARCHAR, "value" VARCHAR, evidence VARCHAR[])[]0
蛋白靶点(预留)
Protein targets (reserved)
taxonSTRUCT("system" VARCHAR, id VARCHAR, "label" VARCHAR, rank VARCHAR, "value" VARCHAR, evidence VARCHAR[])[]26,291
分类学分布注释(LOTUS / COCONUT / MycoBank / LPSN)
Taxonomic occurrence annotations (LOTUS / COCONUT / MycoBank / LPSN)
reactionSTRUCT("system" VARCHAR, id VARCHAR, "label" VARCHAR, rank VARCHAR, "value" VARCHAR, evidence VARCHAR[])[]0
反应记录(预留)
Reaction records (reserved)
licenseSTRUCT(license VARCHAR, licensor VARCHAR)[]1,391,199
许可记录:许可名称与授权方
License records: license name and licensor
provenanceSTRUCT(distributor VARCHAR, dataset VARCHAR, file VARCHAR, source_id VARCHAR)[]1,391,199
来源记录:分发渠道、数据集、文件、来源编号
Source records: distributor, dataset, file, source_id
record_quality_gradeVARCHAR1,391,199
结构完整度:M0 完整结构,M1 脂类简写,M2 仅名称,M3 登记号
Structure completeness: M0 full structure, M1 lipid shorthand, M2 name only, M3 registry id
ccsDOUBLE0
碰撞截面(分子层;预留)
Collision cross section (molecule level; reserved)
standard_availableBOOLEAN1,391,199
至少一条谱来自 AGIS-JBLab 标准品时为 true
True when at least one spectrum comes from an AGIS-JBLab authentic standard
spectrum_countBIGINT0
该化合物关联的谱数(预留;请以谱表为准)
Number of spectra linked to this compound (reserved; use spectrum table)

谱图字段

字段类型Non-null说明
spectrum_uidVARCHAR8,155,799
谱图标识;SOL: 前缀表示来自 AGIS-JBLab 数据集
Spectrum identifier; SOL: prefix marks spectra imported from the AGIS-JBLab dataset
peaks_mzDOUBLE[]8,155,799
碎片 m/z(列表)
Fragment m/z values (list)
peaks_intensityDOUBLE[]8,155,799
碎片强度(列表)
Fragment intensities (list)
content_hashVARCHAR8,155,799
归一化内容指纹(峰、前体、加合物、极性、碰撞能)
Normalised content fingerprint (peaks, precursor, adduct, polarity, CE)
splashVARCHAR3,522,497
SPLASH 谱哈希
SPLASH spectral hash
molecule_uidVARCHAR8,150,202
该谱图所属化合物的主键。
Compound key the spectrum is assigned to
annotation_levelVARCHAR0
注释置信级别(预留)
Annotation confidence level (reserved)
mass_errorDOUBLE0
前体质量误差(预留)
Precursor mass error (reserved)
annotationsSTRUCT(molecule_uid VARCHAR, annotation_level VARCHAR, mass_error DOUBLE, rank BIGINT)[]0
备选注释(预留)
Alternative annotations (reserved)
precursor_mzDOUBLE7,824,243
前体 m/z
Precursor m/z
precursor_typeVARCHAR7,784,033
加合物类型(如 [M+H]+、[M-H]-)
Adduct type (e.g. [M+H]+, [M-H]-)
chargeBIGINT7,365,879
前体离子电荷。
Precursor charge
ionization_modeVARCHAR8,150,791
电离极性
Ionization polarity
ion_sourceVARCHAR3,725,725
离子源(ESI、APCI 等)
Ion source (ESI, APCI, ...)
mass_analyzerVARCHAR7,086
质量分析器
Mass analyser
instrumentVARCHAR[]5,813,538
仪器型号(列表)
Instrument model(s) (list)
instrument_typeVARCHAR[]3,712,017
仪器类型(列表)
Instrument family (list)
resolutionVARCHAR44,457
来源报告的分辨率
Resolving power as reported by source
fragmentation_modeVARCHAR416,779
碎裂方式(HCD、CID 等)
Fragmentation method (HCD, CID, ...)
collision_energySTRUCT("value" DOUBLE, unit VARCHAR, "level" VARCHAR)6,105,224
碰撞能:数值、单位、级别
Collision energy: value, unit, level
isolation_windowVARCHAR0
前体隔离窗口(预留)
Precursor isolation window (reserved)
derivative_typeVARCHAR0
衍生化类型(预留)
Derivatization type (reserved)
derivative_formVARCHAR0
衍生化形式(预留)
Derivatization form (reserved)
derivative_smilesVARCHAR0
衍生化后的 SMILES(预留)
Derivatized SMILES (reserved)
scan_numberBIGINT0
原始扫描号(预留)
Original scan number (reserved)
scan_filterVARCHAR0
原始扫描过滤条件(预留)
Original scan filter (reserved)
retention_timeDOUBLE4,474,730
来源报告的保留时间(单位随来源)
Retention time as reported (units follow source)
retention_indexDOUBLE0
保留指数(预留)
Retention index (reserved)
ccsDOUBLE1,436,982
碰撞截面
Collision cross section
lc_columnVARCHAR1,557
液相色谱柱描述
LC column description
solventVARCHAR0
溶剂(预留)
Solvent (reserved)
flow_rateVARCHAR0
流速(预留)
Flow rate (reserved)
mobile_phaseVARCHAR1,557
流动相描述
Mobile phase description
chromatography_typeVARCHAR0
色谱类型(预留)
Chromatography type (reserved)
column_typeVARCHAR0
色谱柱类型(预留)
Column type (reserved)
techniqueVARCHAR0
技术(预留)
Technique (reserved)
ms_levelVARCHAR6,368,072
来源报告的 MS 级(MS2 / MS3 / … / missing)
MS level as reported (MS2 / MS3 / ... / missing)
base_peakDOUBLE0
基峰强度(预留)
Base peak intensity (reserved)
precursor_intensityDOUBLE0
前体强度(预留)
Precursor intensity (reserved)
originVARCHAR540,502
实验谱;仅当来源标注时填充
experimental; populated only where the source reported it
sample_classVARCHAR0
样本类别(预留)
Sample class (reserved)
source_organismVARCHAR0
来源生物(预留)
Source organism (reserved)
sample_materialVARCHAR0
样本材料(预留)
Sample material (reserved)
sample_massVARCHAR0
样本质量(预留)
Sample mass (reserved)
sample_concentrationVARCHAR0
样本浓度(预留)
Sample concentration (reserved)
sample_phVARCHAR0
样本 pH(预留)
Sample pH (reserved)
spectral_entropyDOUBLE458,350
谱熵
Spectral entropy
normalized_entropyDOUBLE458,350
归一化谱熵
Normalised spectral entropy
qualitySTRUCT(metric VARCHAR, "value" DOUBLE, "method" VARCHAR)[]8,155,799
质量记录:major_frac / base_frac / major_cv / major_median / grade_* / imputed_*
Quality records: major_frac / base_frac / major_cv / major_median / grade_* / imputed_*
licenseSTRUCT(license VARCHAR, licensor VARCHAR)[]8,155,799
许可记录:许可名称与授权方
License records: license name and licensor
provenanceSTRUCT(distributor VARCHAR, dataset VARCHAR, file VARCHAR, source_id VARCHAR)[]8,155,799
来源记录:分发渠道、数据集、文件、来源编号
Source records: distributor, dataset, file, source_id
spectrum_quality_strVARCHAR8,155,799
紧凑质量串:(major_frac,base_frac,major_cv,major_median)-Px-Ax-Bx
Compact quality string: (major_frac,base_frac,major_cv,major_median)-Px-Ax-Bx